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Drexelbioscience

November 18, 2008

Shot in the Dark

MIT biologists decided to pit two bacteria against each other to coax one to transcribe antibiotic genes. See a short film depicting their efforts, and find out why the project raised as many questions as it answered.  You really should see this video.  They are good.

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Filed under: Uncategorized — Peggy Dominy @ 10:49 am


November 10, 2008

Defrosting the Digital Library

A recent paper from PLoS: Computational Biology

Defrosting the Digital Library: Bibliographic Tools for the Next Generation Web

Duncan Hull, Steve R. Pettifer, Douglas B. Kell

Abstract: Many scientists now manage the bulk of their bibliographic information electronically, thereby organizing their publications and citation material from digital libraries. However, a library has been described as “thought in cold storage,” and unfortunately many digital libraries can be cold, impersonal, isolated, and inaccessible places. In this Review, we discuss the current chilly state of digital libraries for the computational biologist, including PubMed, IEEE Xplore, the ACM digital library, ISI Web of Knowledge, Scopus, Citeseer, arXiv, DBLP, and Google Scholar. We illustrate the current process of using these libraries with a typical workflow, and highlight problems with managing data and metadata using URIs. We then examine a range of new applications such as Zotero, Mendeley, Mekentosj Papers, MyNCBI, CiteULike, Connotea, and HubMed that exploit the Web to make these digital libraries more personal, sociable, integrated, and accessible places. We conclude with how these applications may begin to help achieve a digital defrost, and discuss some of the issues that will help or hinder this in terms of making libraries on the Web warmer places in the future, becoming resources that are considerably more useful to both humans and machines.

To read the complete paper:  http://dx.doi.org/10.1371/journal.pcbi.1000204

 

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Filed under: Uncategorized — Tags: , , , — Peggy Dominy @ 11:46 am


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